BDMS documentation

BDMS is a package for simulating trees from birth-death-mutation-sampling (BDMS) processes. All code is freely available at https://github.com/WSDeWitt/BDMS.

User Guide

• Installation
• Citing BDMS

Tutorials

• Quickstart
  • Birth, death, and mutation processes
  • Simulation
  • Visualization
  • Partially observed trees
  • Inhomogeneous processes
• Performance
  • Runtime
  • Growth rate

API Documentation

• bdms
  • Submodules
  • Package Contents

Developer Documentation

• Developer tools
  • Dev environment setup
  • CI
  • Docs
  • Versioning
  • Deployment
• To-do list

Indices and tables

• Index

• Module Index

• Search Page