Publications

A more complete, but more repetitious, publication list can be found at my Google Scholar profile.

* equal contribution

2018

WS DeWitt, L Mesin, GD Victora, VN Minin, FA Matsen. Using genotype abundance to improve phylogenetic inference. Molecular Biology and Evolution, msy020 (in press)

2017

WS DeWitt, KK Quan, D Wilburn, A Sherwood, M Vignali, SC De Rosa, CL Day, TJ Scriba, HS Robins, W Swanson, RO Emerson, P Bradley, C Seshadri. An MHC-independent T-cell repertoire is enriched during active tuberculosis. bioRxiv 123174. (under review)

RO Emerson*, WS DeWitt*, M Vignali, J Gravley, JK Hu, EJ Osborne, C Desmarais, M Klinger, CS Carlson, JA Hansen, M Rieder, HS Robins. Immunosequencing identifies signatures of cytomegalovirus exposure history and HLA-mediated effects on the T cell repertoire. Nature Genetics 49, 659–665

2016

WS DeWitt*, P Lindau*, TM Snyder*, AM Sherwood, M Vignali, CS Carlson, PD Greenberg, N Duerkopp, RO Emerson, HS Robins. A Public Database of Memory and Naive B-Cell Receptor Sequences. PLoS ONE 11(8)

2015

WS DeWitt*, RO Emerson*, P Lindau, M Vignali, TM Snyder, C Desmarais, C Sanders, H Utsugi, EH Warren, J McElrath, KW Makar, A Wald, HS Robins. Dynamics of the Cytotoxic T Cell Response to a Model of Acute Viral Infection. J Virol 89:4517–4526

2014

WS DeWitt, P Lindau, TM Snyder, M Vignali, RO Emerson, HS Robins. Replicate Immunosequencing as a Robust Probe of B Cell Repertoire Diversity. arXiv:1410.0350 [q-bio.QM]

RO Emerson, A Sherwood, WS DeWitt, B Howie, M Rieder, HS Robins. A next-gen pipeline for generation, error correction and annotation of high-throughput immunosequencing data. J Immunol 192:69.10

older

X Xu, Y Shen, WS DeWitt, D Pandya, FZ Bischoff, KD Crew, DL Hershman, MA Maurer, R Parsons, K Kalinsky. Mutational analysis of circulating tumor cells in breast cancer patients by targeted clonal sequencing. J Clin Oncol 30, (suppl; abstr 10516)

WS DeWitt, K. Chu. Imaging Protein Statistical Substate Occupancy in a Spectrum-Function Phase Space. Phys. Rev. Lett. 105, 098101

J. Wu, J. Pepe, WS DeWitt. Nonlinear Behaviors of Contrast Agents Relevant to Diagnostic and Therapeutic Applications. Ultrasound Med Biol. Apr;29(4):555-62.